Program CompLife '05

All sessions and talks will be held in lecture hall A703 (Konstanz, university120k). In the breaks, coffee will be served in the foyer area in front of the lecture hall.

On Sunday evening, a reception will be held in the city hall. If the weather is good, this will take place in the picturesque courtyard. You will be able to taste the local wines.

On Monday evening, we will walk from the conference location to the Island of Mainau. You will have time to enjoy the splendid colors of the huge variety of flowers that island has to offer. In the early evening we will meet for a drink in the Rose Garden and then walk over to the Chestnut Hall where the conference dinner will be served.

The last session will close on Tuesday at 12:30 followed by lunch in the university cafeteria.

We are looking forward to seeing you at the conference and we hope that you will enjoy perusing the program.

(printable version120k)

Sunday, September 25, 2005
12:30	Bus departs from train station
12:30 - 13:00	Registration
13:00	Opening
13:00 - 14:30	Session I: "Systems Biology"
14:30 - 15:00	Coffee Break
15:00 - 16:30	Session II: "Data Analysis and Integration"
16:30 - 17:00	Coffee Break
17:00 - 18:30	Workshop Session: "Distributed Data Mining in Life Science"
18:45	Bus departs from University Main Entrance
19:00 - 21:00	Reception in City Hall
Monday, September 26, 2005
09:00 - 10:00	Plenary Peter Murray-Rust: "The Chemical Semantic Web"
10:00 - 10:30	Coffee Break
10:30 - 12:00	Session III: "Structural Biology"
12:00 - 13:00	Lunch
13:00 - 14:30	Session IV: "Genomics"
14:30 - 15:00	Coffee Break
15:00 - 16:30	Session V: "Computational Proteomics"
16:30 - 19:00	Free Time to explore the Island of Mainau
19:00 - 19:30	Dinner Reception
19:30 - 23:00	Conference Dinner
Tuesday, September 27, 2005
09:00 - 10:30	Session VI: "Molecular Informatics"
10:30 - 11:00	Coffee Break
11:00 - 12:30	Session VII: "Molecular Structure Determination and Simulation"
12:00 - 13:00	Lunch
12:30	Conference Closing

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SESSION I: Systems Biology

Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data Gihan Dawelbait, Christian Pilarsky, Yanju Zhang, Robert Grützmann, Michael Schroeder

Biochemical Pathway Analysis via Signature Mining Eleftherios Panteris, Stephen Swift, Annette Payne, Xiaohui Liu

Recurrent Neuro-Fuzzy Network Models for Reverse Engineering Gene Regulatory Interactions Ioannis Maraziotis, Andrei Dragomir, Anastasios Bezerianos

SESSION II: Data Analysis and Integration

Some Applications of Dummy Point Scatterers for Phasing in Macromolecular X-Ray Crystallography Alexandre Urzhumtsev, Natalia Lunina, Pavel Afonine, Vladimir Y. Lunin

BioRegistry: A Structured Metadata Repository for Bioinformatic Databases Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes

Robust Perron Cluster Analysis for Various Applications in Computational Life Science Marcus Weber, Susanna Kube

SESSION III: Structural Biology

Multiple Alignment of Protein Structures in Three Dimensions Evgeny Krissinel, Kim Henrick

Protein Annotation by Secondary Structure Based Alignments (PASSTA) Constantin Bannert, Jens Stoye

MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson

SESSION IV: Genomics

Frequent Itemsets for Genomic Profiling Jeannette M. De Graaf, Renée X. De Menezes, Judith M. Boer, Walter A. Kosters

Gene Selection Through Sensitivity Analysis of Support Vector Machines Defeng Wang

The Breakpoint Graph in Ciliates Robert Brijder, Hendrik Jan Hoogeboom Grzegorz Rozenberg

SESSION V: Computational Proteomics

ProSpect: An R Package for Analysing SELDI Measurements Indentifying Protein Biomarker Andreas Quandt, Alexander Ploner, Chuen Seng Tan, Janne Lehtiö, Yudi Pawitan

Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm

Detection of Protein Assemblies in Crystal Evgeny Krissinel, Kim Henrick

SESSION VI: Molecular Informatics

Molecular Similarity Searching Using COSMO Screening Charges (COSMO/3PP) Andreas Bender, Andreas Klamt, Karin Wichmann, Michael Thormann, Robert C. Glen

Increasing Diversity in In-silico Screening with Target Flexibility Bernhard Fischer, Holger Merlitz, Wolfgang Wenzel

Multiple Semi-flexible 3D Superposition of Drug-Sized Molecules Daniel Baum

SESSION VII: Molecular Structure Determination and Simulation

Efficiency Considerations in Solving Smoluchowksi Equations for Rough Potentials Banushkina Polina, Schenk Olaf, Meuwly Markus

Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization Markus Bauer, Gunnar W. Klau, Knut Reinert

Visual Analysis of Molecular Conformations via a Dynamic Density Mixture Model Johannes Schmidt-Ehrenberg, Hans-Christian Hege

Workshop on Distributed Data Mining in Life Science

Distributed BLAST in a Grid Computing Context Micha Bayer, Richard Sinnott

Parallel Tuning of Support Vector Machine Learning Parameters for Large and Unbalanced Data Sets Tatjana Eitrich, Bruno Lang

The Architecture of a Proteomic Network in the Yeast Emad Ramadan, Christopher Osgood, Alex Pothen