Program
Here is the program with details on the contents of each session. We hope you enjoy looking at it!
| 27. Sep 2006 | Program |
| 09.00 | Registration |
| 09.30 | Opening and Introduction: Robert Glen / Michael Berthold |
| Plenary Speech: David Wales, Chair: Robert Glen | |
| 10.45 | Coffee break |
| 11.00 | Session I - Systems Biology, Chair: Janette Jones |
| Adaptive Approach for Modelling Variability in Pharmacokinetics Andrea Y. Weisse, Illia Horenko, Wilhelm Huisinga |
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| A New Approach to Flux Coupling Analysis of Metabolic Networks Abdelhalim Larhlimi, Alexander Bockmayr |
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| 12.00 | Lunch |
| 13.00 | Session II - Molecular Informatics, Chair: Peter Corbett |
| A Structure-based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants Annalisa Marsico, K.Tanuj Sapra, Daniel J. Muller, Michael Schroeder, Dirk Labudde |
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| Classifying the World Anti-Doping Agency's 2005 Prohibited List Using the Chemistry Development Kit Fingerprint Edward Cannon, John Mitchell |
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| A Point-Matching Based Algorithm for 3D Surface Alignment of Drug-Sized Molecules Daniel Baum, Hans-Christian Hege |
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| 14.30 | Coffee break |
| 15.00 | Session III - Data Mining I, Chair: Arno Siebes |
| Building Structure-Property Predictive Models Using Data Assimilation Hamse Mussa, David Lary, Robert Glen |
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| Set-oriented Dimension Reduction: Localizing Principal Component Analysis via Hidden Markov Models Illia Horenko, Johannes Schmidt-Ehrenberg, Christof Schuette |
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| Relational Subgroup Discovery for Descriptive Analysis of Microarray Data Igor Trajkovski, Filip Zelezny, Jakub Tolar, Nada Lavrac |
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| 16.30 | Coffee (time to set up software in CyberCafé) |
| 17.00 |  Free Software Session and Demonstrations, followed by Reception |
| 20.00 | |
| 28. Sep 2006 | |
| 09.00 | Plenary speech: Daniel Zaharevitz, Chair: Robert Glen |
| 10.00 | Coffee break |
| 10.30 | Session IV - Genomics I, Chair: Xiaohui Liu |
| Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering Michael Hirsch, Allan Tucker, Stephen Swift, Nigel Martin, Christine Orengo, Paul Kellam, Xiaohui Liu |
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| A Hybrid Grid and Its Application to Clustering Orthologous Groups for Multiple Genomes Tae-Kyung Kim, Kyoung-Ran Kim, Sang-Keun Oh, Jong-Hak Lee, Wan-Sup Cho |
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| Promoter Prediction Using Physico-chemical Properties of DNA Philip Uren, R. Michael Cameron-Jones, Arthur Sale |
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| 12.00 | Lunch |
| 13.00 | Session V - Data Mining II, Chair: Hong Yan |
| Applicability of Loop Recombination in Ciliates using the Breakpoint Graph Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus |
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| High-Throughput Identification of Chemistry in Life Science Texts Peter Corbett, Peter Murray-Rust |
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| Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra below Noise Level Tim Conrad, Alexander Leichtle, Andre Hagehuelsmann, Sven Baumann, Joachim Thiery, Christof Schuette, Elmar Diederichs |
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| 14.30 | Coffee break |
| 15.00 | Session VI - Molecular Simulation, Chair: Knut Reinert |
| Dynamic Complexity of Chaotic Transitions in High-Dimensional Classical Dynamics: Leu-Enkephalin Folding Dmitry Nerukh, George Karvounis, Robert Glen |
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| Solvent Effects and Conformational Stability of a Tripeptide Maxim Fedorov, Stephan Schumm, Jonathan Goodman |
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| Grid Assisted Ensemble Molecular Dynamics Simulations of HIV-1 Proteases Reveal Novel Conformations of the Inhibitor Saquinavir Kashif Sadiq, Stefan Zasada, Peter Coveney |
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| 16:30 | Coffee break |
| 17.00 | Session VII- Computational Neuroscience, Chair: Aldo Faisal |
| The Language of Cortical Dynamics
Peter Andras |
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| A Simple Method to Simultaneously Track the Numbers of Expressed Channel Proteins in a Neuron Aldo Faisal, Jeremy Niven |
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| 18.00 | |
| 19.00 | Conference dinner |
| 23.00 | |
| 29. Sep 2006 | |
| 09.00 | Plenary speech: Hans-Christian Hege, Chair: Michael Berthold |
| 10.00 | Coffee break |
| 10.30 | Session VIII - Biological Networks / Metabolism, Chair: Andreas Bender |
| Software Supported Modelling in Pharmacokinetics Regina Telgmann, Max von Kleist, Wilhelm Huisinga |
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| On the Interpretation of High Throughput MS Based Metabolomics Fingerprints with Random Forest David Enot, Manfred Beckmann, John Draper |
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| Construction of Correlation Networks with Explicit Time-Slices Using Time-Lagged, Variable Interval Standard and Partial Correlation Coefficients Wouter Meuleman, Monique Welten, Fons Verbeek |
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| 12.00 | Lunch |
| 13.00 | Session IX - Genomics II, Chair: Robert Clark |
| Parametric Spectral Analysis of Malaria Gene Expression Time Series Data Liping Du, Shuanhu Wu, Alan Liew, David Smith, Hong Yan |
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| An Efficient Algorithm for Finding Long Conserved Regions between Genes Tak-Man Ma, Yuh-Dauh Lyuu, Yen-Wu Ti |
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| The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders Matthias Bernt, Daniel Merkle, Martin Middendorf |
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| 14.30 | Conference Closes |
| Punting trip available for people staying on in Cambridge | |
